The problems:
W: GPG error: http://archive.canonical.com
jaunty Release: The following signatures were invalid: BADSIG
40976EAF437D05B5 Ubuntu Archive Automatic Signing Key
W: GPG error: http://security.ubuntu.com
jaunty-security Release: The following signatures were invalid: BADSIG
40976EAF437D05B5 Ubuntu Archive Automatic Signing Key
W: GPG error: http://us.archive.ubuntu.com
jaunty Release: The following signatures were invalid: BADSIG
40976EAF437D05B5 Ubuntu Archive Automatic Signing Key
W: GPG error: http://us.archive.ubuntu.com
jaunty-updates Release: The following signatures were invalid: BADSIG
40976EAF437D05B5 Ubuntu Archive Automatic Signing Key
How to fix :
apt-get clean
cd /var/lib/apt
mv lists lists.old
mkdir -p lists/partial
apt-get clean
apt-get update
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